(2010) Community landscapes: a novel, integrative approach for the determination of overlapping network modules. Kovács, I.A., Palotai, R., Szalay-Bekő, M.
#CYTOSCAPE 2.8 DOWNLOAD FULL#
ModuLand method: full package containing the NodeLand, LinkLand, Perturland, Edgeweight, ProportionalHill, GradientHill and Totalhill methods Changes of version 1.3 (June 2012) The random samples can be downloaded from here and the Python scripts creating the subnetworks are available here. In the publication we also analyzed 2000 connected random subnetworks of the E.Several example networks in standard GML network format and Cytoscape Session (CYS) format can be downloaded here.compatible former version can be downloaded from here: ĭownload Cytoscape 3.0-compatible plugin and Register for newsletters! The current version is compatible with Cytoscape 3.0. The ModuLand Cytoscape plug-in containing the optimal LinkLand version of the ModuLand method.A detailed User Guide and Installation Instruction for the Cytoscape plug-in version of the optimal LinkLand version of the ModuLand method.Supplementary Material of the manuscript.(2012) ModuLand plug-in for Cytoscape: extensively overlapping network modules, community centrality and their use in biological networks. Szalay-Bekő, M., Palotai, R., Szappanos, B., Kovács, I.A., Papp, B.ModuLand: Cytoscape plug-in containing the Linkland and ProportionalHill methods As various adaptations of the method family, we developed several algorithms, which provide an efficient analysis of weighted and directed networks, and (1) determine overlapping modules with high resolution (2) uncover a detailed hierarchical network structure allowing an efficient, zoom-in analysis of large networks (3) allow the determination of key network nodes and (4) help to predict network dynamics.Ĭonclusions/Significance: The concept opens a wide range of possibilities to develop new approaches and applications including network routing, classification, comparison and prediction. Methodology/Principal Findings: Here we introduce the novel concept of ModuLand and its plug-in to the widely used Cytoscape progam, an integrative method family determining overlapping network modules as hills of an influence function-based, centrality-type community landscape, and including several widely used modularization methods as special cases. However, the development of a method, which is both fast and accurate, provides modular overlaps and partitions of a heterogeneous network, has proven to be rather difficult. Background: Network communities help the functional organization and evolution of complex networks.
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